Node 50
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	1	0	0	0	A	1
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.27	0	0.73	T	0.73
10	0.02	0.97	0	0.01	C	0.97
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.11	0	0.89	T	0.89
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	1	0	0	C	1
19	0	0.99	0	0.01	C	0.99
20	0	0	0	1	T	1
21	0.2	0	0.76	0.05	G	0.76
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.14	0	0.86	0	G	0.86
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0	0	1	0	G	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.98	0	0.02	C	0.98
31	0	1	0	0	C	1
32	0.02	0	0.98	0	G	0.98
33	0.01	0.96	0.03	0.01	C	0.96
34	0.02	0.06	0.91	0.01	G	0.91
35	0.95	0.03	0.02	0	A	0.95
36	0.41	0.09	0.48	0.01	G	0.48
37	0	0.99	0	0	C	0.99
38	0.01	0	0.02	0.97	T	0.97
39	0	0.15	0	0.85	T	0.85
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.74	0	0.26	C	0.74
43	0	1	0	0	C	1
44	0	1	0	0	C	1
45	0	0.12	0	0.88	T	0.88
46	0.01	0	0	0.99	T	0.99
47	0	1	0	0	C	1
48	0	0.97	0	0.03	C	0.97
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.52	0.03	0.38	0.08	A	0.52
52	0	1	0	0	C	1
53	0	0	1	0	G	1
54	0.02	0.81	0.14	0.03	C	0.81
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.96	0	0.04	0	A	0.96
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0	0	1	0	G	1
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.96	0	0.04	C	0.96
70	0.18	0	0.82	0	G	0.82
71	0	0	0	1	T	1
72	0.01	0.02	0.01	0.97	T	0.97
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	0.98	0	0.02	0	A	0.98
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.02	0.02	0.96	0.01	G	0.96
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.84	0	0.16	0	A	0.84
83	1	0	0	0	A	1
84	0.6	0.04	0.33	0.03	A	0.6
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.98	0	0.02	C	0.98
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	1	0	0	C	1
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.99	0	0.01	C	0.99
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.89	0	0.11	C	0.89
100	0	1	0	0	C	1
101	1	0	0	0	A	1
102	0	0	1	0	G	1
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0	0.98	0	0.01	C	0.98
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.02	0	0.97	0	G	0.97
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0	0.01	0.99	0	G	0.99
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.01	0	0.99	T	0.99
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.02	0.72	0.22	0.04	C	0.72
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.51	0	0.49	C	0.51
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0	0.06	0	0.94	T	0.94
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.34	0	0.65	0	G	0.65
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0	0	1	0	G	1
137	0	1	0	0	C	1
138	0	0.79	0	0.2	C	0.79
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.01	0	0.99	T	0.99
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.82	0	0.18	C	0.82
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0.01	0.03	0.96	0	G	0.96
148	0.99	0	0.01	0	A	0.99
149	0	1	0	0	C	1
150	0.01	0.97	0.01	0.01	C	0.97
151	1	0	0	0	A	1
152	0	1	0	0	C	1
153	0.04	0.04	0.9	0.02	G	0.9
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0.01	0.87	0.04	0.08	C	0.87
157	0.98	0	0.02	0	A	0.98
158	0.03	0.95	0.01	0.01	C	0.95
159	0	0.99	0	0.01	C	0.99
160	1	0	0	0	A	1
161	0	1	0	0	C	1
162	0	0.98	0.01	0.01	C	0.98
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	1	0	0	0	A	1
167	0	1	0	0	C	1
168	0	0.87	0	0.13	C	0.87
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.95	0	0.05	C	0.95
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.01	0	0.99	0	G	0.99
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0	0	1	0	G	1
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.94	0	0.06	C	0.94
181	0	0	1	0	G	1
182	0	0	0	1	T	1
183	0	1	0	0	C	1
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.01	0.61	0.04	0.34	C	0.61
187	0	1	0	0	C	1
188	1	0	0	0	A	1
189	0	0.01	0	0.99	T	0.99
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0	0.92	0	0.08	C	0.92
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.93	0.03	0.04	C	0.93
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.47	0	0.53	T	0.53
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.98	0	0.02	C	0.98
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.24	0	0.76	0	G	0.76
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0.01	0	0.99	0	G	0.99
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0	0	1	0	G	1
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.38	0.35	0.23	0.04	A	0.38
226	0.02	0.23	0.48	0.27	G	0.48
227	0	1	0	0	C	1
228	0.01	0	0.99	0	G	0.99
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	0.99	0	0.01	0	A	0.99
232	1	0	0	0	A	1
233	0.96	0	0.04	0	A	0.96
234	1	0	0	0	A	1
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0.03	0.03	0.01	0.93	T	0.93
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	1	0	0	0	A	1
241	0	0	0.96	0.03	G	0.96
242	0.01	0	0	0.99	T	0.99
243	0.02	0.45	0.1	0.43	C	0.45
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.03	0.07	0.9	0.01	G	0.9
247	0.02	0.08	0.88	0.02	G	0.88
248	0.02	0.97	0	0.01	C	0.97
249	0.37	0.18	0.42	0.04	G	0.42
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.84	0	0.15	0	A	0.84
254	0.13	0	0.87	0	G	0.87
255	0	0.92	0.01	0.07	C	0.92
256	0.02	0.96	0.01	0.01	C	0.96
257	0.98	0.01	0.01	0	A	0.98
258	0.01	0	0.99	0	G	0.99
259	0	0.92	0	0.08	C	0.92
260	0	0	0	1	T	1
261	0.01	0	0.99	0	G	0.99
262	0	1	0	0	C	1
263	1	0	0	0	A	1
264	0.01	0	0.99	0	G	0.99
265	0.04	0	0.96	0	G	0.96
266	0.05	0.22	0	0.72	T	0.72
267	0.04	0	0.96	0	G	0.96
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.01	0	0.99	0	G	0.99
271	0	0	1	0	G	1
272	1	0	0	0	A	1
273	0.03	0	0.97	0	G	0.97
274	0	0	0	1	T	1
275	0	0	1	0	G	1
276	0	0.68	0	0.32	C	0.68
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.66	0	0.34	C	0.66
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	1	0	0	C	1
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0.07	0	0.93	T	0.93
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	1	0	0	C	1
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0	0	1	T	1
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.7	0	0.3	C	0.7
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.99	0	0.01	C	0.99
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0	0	1	0	G	1
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.83	0	0.17	0	A	0.83
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.99	0	0.01	C	0.99
313	0.01	0.01	0	0.98	T	0.98
314	0	0	1	0	G	1
315	0	0.99	0	0.01	C	0.99
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.15	0.04	0.01	0.8	T	0.8
322	0.01	0	0.99	0	G	0.99
323	1	0	0	0	A	1
324	0.62	0.36	0.01	0.01	A	0.62
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	0.99	0	0.01	C	0.99
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.02	0	0.98	0	G	0.98
331	0	1	0	0	C	1
332	1	0	0	0	A	1
333	0	0	1	0	G	1
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.01	0	0.98	0	G	0.98
337	0	1	0	0	C	1
338	0.99	0	0.01	0	A	0.99
339	0	0.99	0	0.01	C	0.99
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.03	0.89	0.05	0.03	C	0.89
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.11	0	0.89	0	G	0.89
349	0.99	0.01	0	0	A	0.99
350	0	0	0	1	T	1
351	0	0	1	0	G	1
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.02	0	0.98	0	G	0.98
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.75	0	0.25	C	0.75
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.58	0	0.41	C	0.58
364	1	0	0	0	A	1
365	0.99	0	0	0.01	A	0.99
366	0	1	0	0	C	1
367	0.02	0.03	0.94	0.01	G	0.94
368	1	0	0	0	A	1
369	0	0	0	1	T	1
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	0.71	0	0.29	0	A	0.71
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.76	0	0.23	C	0.76
376	0	0	0	1	T	1
377	0.99	0	0.01	0	A	0.99
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.68	0	0.32	C	0.68
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.91	0	0.09	C	0.91
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	1	0	0	C	1
388	1	0	0	0	A	1
389	0	0	1	0	G	1
390	0	0.65	0	0.35	C	0.65
391	0	0	1	0	G	1
392	1	0	0	0	A	1
393	0	0.02	0	0.98	T	0.98
394	0.28	0	0.72	0	G	0.72
395	0.01	0.98	0	0	C	0.98
396	0	1	0	0	C	1
397	0	0.96	0.04	0	C	0.96
398	0	1	0	0	C	1
399	0.54	0.1	0.34	0.02	A	0.54
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.59	0.01	0.4	0	A	0.59
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	1	0	0	0	A	1
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	1	0	0	C	1
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.99	0	0.01	0	A	0.99
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	1	0	0	C	1
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	0.94	0.04	0.01	0.01	A	0.94
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.01	0	0.98	0	G	0.98
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	1	0	0	C	1
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.98	0	0.02	C	0.98
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	1	0	0	C	1
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0	0	1	T	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0.05	0	0.95	T	0.95
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	1	0	0	C	1
452	1	0	0	0	A	1
453	0	0.01	0	0.99	T	0.99
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	1	0	0	C	1
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGAATTCTCGATAACCTGGAGCAGTTCCGCGAGCTTTACCCTTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGACCACGGACACCACC---ACCGACGCGCTGTTCGTCGGCCATCGCCGCTATTTCGAGGTGCATTACTACCTGCAGGGAGCGCAAAAAATTGAAGTCGCGGCGAAAAGCCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGC---GGTGAAACCGTGCAGGTGCACGAAGGCCAGATGGTGATTTGCGACAACGATGAAGCCTACCGCTTCATCAGCGATGCCCCAGTA------AAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGAATTCTCGATAACCTGGAGCAGTTCCGCGAGCTTTACCCTTCCGGACGCAAATGGCAGCGCTGCGTTGAAGCGATTAAAAACATCGACAACATCCAGCCCGGCGTGGCGCATTCCATCGGTGATTCGCTGGCCTATCGCGTGACCACGGACACCACCACCGACGCGCTGTTCGTCGGCCATCGCCGCTATTTCGAGGTGCATTACTACCTGCAGGGAGCGCAAAAAATTGAAGTCGCGGCGAAAAGCCAGCTGCAGGTGGTGGAGTGCTACCGCGATGAAACCGATCGCGAATACCTGAAAGGCTGCGGTGAAACCGTGCAGGTGCACGAAGGCCAGATGGTGATTTGCGACAACGATGAAGCCTACCGCTTCATCAGCGATGCCCCAGTAAAAAAAGTCGTACTCAAAGTGACCATCGAAGACGGTTATTTCCATAACAAATAA

The accuracy score for that sequence is 0.962844444444445

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 1.34432002366439e-09.
The natural log of that probability is -20.4273775103443.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	1	A	0	9999	
L	0.97	I	0.02	48.5	
D	1	A	0	9999	
N	1	A	0	9999	
L	1.0095	F	0.0005	2019	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
R	0.9898	H	0.0194	51.020618556701	
E	0.769405	D	0.08645	8.9	
L	0.9603	R	0.0198	48.5	
Y	1	A	0	9999	
P	1	A	0	9999	
S	0.99	T	0.01	99	
G	1.01	A	0	9999	
R	1	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.8282	I	0.18	4.60111111111111	
E	1	A	0	9999	
A	1.01	R	0	9999	
I	1	A	0	9999	
K	0.7812	E	0.1488	5.25	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	1	A	0	9999	
P	0.99	A	0	9999	
G	1	A	0	9999	
V	0.99	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	1	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
A	0.99	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
T	0.99	A	0.01	99	
T	1	A	0	9999	
D	0.95	E	0.05	19	
T	0.931	N	0.0294	31.6666666666667	
T	1	A	0	9999	
	0	-	0	0
T	1	A	0	9999	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	1	A	0	9999	
V	1	A	0	9999	
G	1	A	0	9999	
H	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	1	A	0	9999	
A	0.48	S	0.27	1.77777777777778	
Q	1	A	0	9999	
K	0.96	R	0.04	24	
I	0.99	M	0.01	99	
E	1	A	0	9999	
V	0.9504	F	0.026136	36.3636363636364	
A	1.01	R	0	9999	
A	0.862136	P	0.078376	11	
K	1	A	0	9999	
S	0.723492	G	0.1305	5.544	
Q	0.9408	K	0.0196	48	
L	1	A	0	9999	
Q	1	A	0	9999	
V	0.6912	A	0.2112	3.27272727272727	
V	1	A	0	9999	
E	1	A	0	9999	
C	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	1	A	0	9999	
C	0.98	R	0.01	98	
	0	-	0	0
G	1	A	0	9999	
E	0.6237	D	0.3663	1.7027027027027	
T	1	A	0	9999	
V	1	A	0	9999	
Q	1	A	0	9999	
V	0.99	A	0	9999	
H	0.99	R	0.01	99	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.99	L	0.01	99	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	0.99	A	0	9999	
N	0.99	I	0.01	99	
D	0.94	H	0.03	31.3333333333333	
E	1	A	0	9999	
A	0.99	R	0	9999	
Y	0.99	C	0.01	99	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
S	1	A	0	9999	
D	1	A	0	9999	
A	0.7056	T	0.2744	2.57142857142857	
P	0.96	A	0.04	24	
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	0.95	N	0.05	19	
V	0.99	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
H	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFRELYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVTTDTT-TDALFVGHRRYFEVHYYLQGAQKIEVAAKSQLQVVECYRDETDREYLKGC-GETVQVHEGQMVICDNDEAYRFISDAPV--KKVVLKVTIEDGYFHNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFRELYPSGRKWQRCVEAIKNIDNIQPGVAHSIGDSLAYRVTTDTTTDALFVGHRRYFEVHYYLQGAQKIEVAAKSQLQVVECYRDETDREYLKGCGETVQVHEGQMVICDNDEAYRFISDAPVKKVVLKVTIEDGYFHNKX

The accuracy score for that sequence is 0.978911553333333

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.0238485929480334
The natural log of that probability is -3.7360300592777.

